This is a know issue in version 5. The issue is fixed in the latest version of ConQuest (version 7) on MyDesk.
To check if your Totals are correct :
Go to Comparisons
Then click on Options and turn off Page Totals Rows (If highlighted they are active)
Once turned off select the View In Excel button (Excel Icon on the top right of the window) to export the View
Highlight all figures in the Extension column and do an auto sum on them to check they add up to the Total in Comparisons.
